DRAFT Specification v. 0.0.1

Description

This Container profile specification presents a representation of a Container such as Docker or Singularity that is used in scientific compute.

Schema.org hierarchy

This is a new Profile that fits into the schema.org hierarchy as follows:

Thing

Group	Use Cases	Task & Issues	Examples

You can read the release version of this specification here.

Key to specification table

Schema.org properties where the Expected Types have been changed, or new (i.e., Bioschemas created) properties/types are green.

Schema.org properties/types are red.

Pending Schema.org properties/types are blue.

External (i.e., from 3rd party ontology) properties/types are black.

CD = Cardinality

View all examples

//Property: applicationCategory
{   "@type": ["SoftwareApplication", "Container"],   "applicationCategory": "singularity" }


//Property: citation
{ "@type": ["SoftwareApplication", "Tool"], "citation": "https://dx.doi.org/10.1016/S0022-2836(05)80360-2" }


//Property: dateCreated
{ "@type": ["SoftwareApplication", "Tool"], "dateCreated": "2108-06-13" }


//Property: dateModified
{ "@type": ["SoftwareApplication", "Tool"], "dateModified": "2108-08-07" }


//Property: downloadUrl
{   "@type": ["SoftwareApplication", "Tool"],   "downloadURL": "https://github.com/sacdallago/cellmap" }


//Property: featureList
{   "@type": ["SoftwareApplication", "Tool"],   "featureList": ["http://edamontology.org/topic_0821", "http://edamontology.org/topic_0128"] }


//Property: identifier
<username>/<repository>:<tag>@<hash>


//Property: input
{ "@type": ["SoftwareApplication", "Tool"], "input": ["http://edamontology.org/data_2977", "http://edamontology.org/data_2976"] }


//Property: keywords
{ "@type": ["SoftwareApplication", "Tool"], "ketwords": "Biology, chemistry, medicine" }


//Property: license
{ "@type": ["SoftwareApplication", "Tool"], "license": "https://www.apache.org/licenses/LICENSE-2.0" }


//Property: operatingSystem
{   "@type": ["SoftwareApplication", "Tool"],   "operatingSystem": ["Windows 7 or above", "Linux/Unix", "Mac/Apple"] }


//Property: output
{ "@type": ["SoftwareApplication", "Tool"], "input": ["http://edamontology.org/data_1383", "http://edamontology.org/data_1384"] }


//Property: publisher
{   "@type": ["SoftwareApplication", "Tool"],   "publisher": {     "@type": "Organization",     "name": "National Center for Biotechnology Information National Library of Medicine",     "alternatName": "NCBI NLM"   } }


//Property: softwareHelp
{   "@type": ["SoftwareApplication", "Tool"],   "softwareHelp": "https://biotools.readthedocs.io/en/latest/" }


//Property: softwareRequirements
{   "@type": ["SoftwareApplication", "Tool"],   "softwareRequirements": "JRE 8.0 or above" }


//Property: softwareVersion
{   "@type": ["SoftwareApplication", "Tool"],   "softwareVersion": "1.0.2" }

Property	Expected Type	Description	CD	Controlled Vocabulary	Example
Marginality: Minimum.
description	Text	Schema: A description of the item. Bioschemas: a linux container	ONE
featureList	Text URL	Schema: Features or modules provided by this application (and possibly required by other applications). Bioschemas: Please choose values from EDAM:Operation.	MANY	EDAM:Operation	View ≪featureList≫ example Property ≪featureList≫ example `{ "@type": ["SoftwareApplication", "Tool"], "featureList": ["http://edamontology.org/topic_0821", "http://edamontology.org/topic_0128"] }`
name	Text	Schema: The name of the item.	ONE
softwareVersion	Text	Schema: Version of the software instance. Bioschemas: version of the container instance	ONE		View ≪softwareVersion≫ example Property ≪softwareVersion≫ example `{ "@type": ["SoftwareApplication", "Tool"], "softwareVersion": "1.0.2" }`
url	URL	Schema: URL of the item. Bioschemas: URL of the container, typically associated with a registry that shows the ContainerRecipe, vulnerability scans, and other metadata. This property can be used on a page listing many containers to indicate each individual container’s page.	ONE
Marginality: Recommended.
ImageMediaType	Text URL	Schema: The media type of the container image Bioschemas: The media type of the container image	ONE	https://github.com/opencontainers/image-spec/blob/master/media-types.md
alternateName	Text	Schema: An alias for the item.	MANY
citation	CreativeWork Text	Schema: A citation or reference to another creative work, such as another publication, web page, scholarly article, etc. Bioschemas: Publication about this software.	MANY		View ≪citation≫ example Property ≪citation≫ example `{ "@type": ["SoftwareApplication", "Tool"], "citation": "https://dx.doi.org/10.1016/S0022-2836(05)80360-2" }`
config	Text URL	Schema: This REQUIRED property references a configuration object for a container, by digest.	ONE	https://github.com/opencontainers/image-spec/blob/master/manifest.md
configMediaType	Text URL	Schema: This descriptor property has additional restrictions for config.	ONE	https://github.com/opencontainers/image-spec/blob/master/manifest.md
identifier	PropertyValue Text URL	Schema: The identifier property represents any kind of identifier for any kind of Thing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See background notes for more details. Bioschemas: Unique identifier for the container, typically corresponding to a uri to designate a registry source	ONE		View ≪identifier≫ example Property ≪identifier≫ example `<username>/<repository>:<tag>@<hash>`
input	URL	Bioschemas: The input format of the data. Must be one of the EDAM:Data concept labels or one of its synonyms.	MANY	EDAM:Data	View ≪input≫ example Property ≪input≫ example `{ "@type": ["SoftwareApplication", "Tool"], "input": ["http://edamontology.org/data_2977", "http://edamontology.org/data_2976"] }`
layers	Text URL	Schema: Each item in the array MUST be a descriptor. The array MUST have the base layer at index 0. Subsequent layers MUST then follow in stack order (i.e. from layers[0] to layers[len(layers)-1]). The final filesystem layout MUST match the result of applying the layers to an empty directory. The ownership, mode, and other attributes of the initial empty directory are unspecified. Bioschemas: Each item in the array MUST be a descriptor. The array MUST have the base layer at index 0. Subsequent layers MUST then follow in stack order (i.e. from layers[0] to layers[len(layers)-1]). The final filesystem layout MUST match the result of applying the layers to an empty directory. The ownership, mode, and other attributes of the initial empty directory are unspecified.	MANY	https://github.com/opencontainers/image-spec/blob/master/manifest.md
layersMediaType	Text URL	Schema: This descriptor property has additional restrictions for layers[]. Bioschemas: This descriptor property has additional restrictions for layers[].	MANY	https://github.com/opencontainers/image-spec/blob/master/manifest.md
license	Text URL	Schema: A license document that applies to this content, typically indicated by URL. Bioschemas: The applicable software license. Note: Bioschemas have changed the Expected Types to URL or Text.	MANY		View ≪license≫ example Property ≪license≫ example `{ "@type": ["SoftwareApplication", "Tool"], "license": "https://www.apache.org/licenses/LICENSE-2.0" }`
mediaType	Text URL	Schema: This property is reserved for use, to maintain compatibility. When used, this field contains the media type of this document, which differs from the descriptor use of mediaType. Bioschemas: This property is reserved for use, to maintain compatibility. When used, this field contains the media type of this document, which differs from the descriptor use of mediaType.	ONE	https://github.com/opencontainers/image-spec/blob/master/manifest.md
output	URL	Bioschemas: The output format of the data. Must be one of the EDAM:Data concept labels or one of its synonyms.	MANY	EDAM:Data	View ≪output≫ example Property ≪output≫ example `{ "@type": ["SoftwareApplication", "Tool"], "input": ["http://edamontology.org/data_1383", "http://edamontology.org/data_1384"] }`
publisher	Organization Person	Schema: The publisher of the creative work.	MANY		View ≪publisher≫ example Property ≪publisher≫ example `{ "@type": ["SoftwareApplication", "Tool"], "publisher": { "@type": "Organization", "name": "National Center for Biotechnology Information National Library of Medicine", "alternatName": "NCBI NLM" } }`
schemaVersion	Number Text	Schema: This REQUIRED property specifies the image manifest schema version. For this version of the specification, this MUST be 2 to ensure backward compatibility with older versions of Docker. The value of this field will not change. This field MAY be removed in a future version of the specification. Bioschemas: This REQUIRED property specifies the image manifest schema version. For this version of the specification, this MUST be 2 to ensure backward compatibility with older versions of Docker. The value of this field will not change. This field MAY be removed in a future version of the specification.	ONE	https://github.com/opencontainers/image-spec/blob/master/manifest.md
Marginality: Optional.
annotations	Text	Schema: This OPTIONAL property contains arbitrary metadata for the image manifest. This OPTIONAL property MUST use the annotation rules. Bioschemas: This OPTIONAL property contains arbitrary metadata for the image manifest. This OPTIONAL property MUST use the annotation rules.	MANY	https://github.com/opencontainers/image-spec/blob/master/manifest.md
applicationCategory	Text	Schema: Type of software application, e.g. ‘Game, Multimedia’. Bioschemas: Type of software e.g. database, tool, service. Note: Bioschemas have removed URL from the Expected Types.	MANY	Please indicate the container technology in all lowercase	View ≪applicationCategory≫ example Property ≪applicationCategory≫ example `{ "@type": ["SoftwareApplication", "Container"], "applicationCategory": "singularity" }`
dateCreated	Date DateTime	Schema: The date on which the CreativeWork was created or the item was added to a DataFeed.	ONE		View ≪dateCreated≫ example Property ≪dateCreated≫ example `{ "@type": ["SoftwareApplication", "Tool"], "dateCreated": "2108-06-13" }`
dateModified	Date DateTime	Schema: The date on which the CreativeWork was most recently modified or when the item’s entry was modified within a DataFeed.	ONE		View ≪dateModified≫ example Property ≪dateModified≫ example `{ "@type": ["SoftwareApplication", "Tool"], "dateModified": "2108-08-07" }`
downloadUrl	URL	Schema: If the file can be downloaded, URL to download the binary. For containers without an exposed wget url or similar, this can be the pull command.	MANY		View ≪downloadUrl≫ example Property ≪downloadUrl≫ example `{ "@type": ["SoftwareApplication", "Tool"], "downloadURL": "https://github.com/sacdallago/cellmap" }`
hasPart	CreativeWork	Schema: Indicates a CreativeWork that is (in some sense) a part of this CreativeWork. Inverse property: isPartOf. Bioschemas: Used to describe tools included into suites/bundles/workflows.	MANY
keywords	Text	Schema: Keywords or tags used to describe this content. Multiple entries in a keywords list are typically delimited by commas.	ONE	EDAM:Topic	View ≪keywords≫ example Property ≪keywords≫ example `{ "@type": ["SoftwareApplication", "Tool"], "ketwords": "Biology, chemistry, medicine" }`
operatingSystem	Text	Schema: Operating systems supported (Windows 7, OSX 10.6, Android 1.6). Bioschemas: Operating systems on which the container runs, typically Linux derivatives and (for some containers) Windows.	MANY		View ≪operatingSystem≫ example Property ≪operatingSystem≫ example `{ "@type": ["SoftwareApplication", "Tool"], "operatingSystem": ["Windows 7 or above", "Linux/Unix", "Mac/Apple"] }`
softwareHelp	CreativeWork	Schema: Software application help. Bioschemas: A documentation for the container, typically showing install steps, usage, and a changelog.	MANY		View ≪softwareHelp≫ example Property ≪softwareHelp≫ example `{ "@type": ["SoftwareApplication", "Tool"], "softwareHelp": "https://biotools.readthedocs.io/en/latest/" }`
softwareRequirements	Text URL	Schema: Component dependency requirements for application. This includes runtime environments and shared libraries that are not included in the application distribution package, but required to run the application (Examples: DirectX, Java or .NET runtime). Supersedes requirements.	MANY		View ≪softwareRequirements≫ example Property ≪softwareRequirements≫ example `{ "@type": ["SoftwareApplication", "Tool"], "softwareRequirements": "JRE 8.0 or above" }`